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Papers from the BENOL Lab

CLICK FOR MORE REFERENCES AND PDFs

 

 

 

A crab swarm at an ecological hotspot: patchiness and population density from AUV observations at a coastal, tropical seamount (2016)

(supplemental materials & article metadata)

 

  

9.7 MB

 

Whales and waves: Humpback whale foraging response and the shoaling of internal waves at Stellwagen Bank (2015)



4 MB

Species and stage - specific barnacle larval distributions obtained from AUV sampling and genetic analysis in Buzzards Bay, Massachusetts, USA (2015)


2.5 MB

 Phylogeographic structure and
northward range expansion in the
barnacle Chthamalus fragilis (2015)

 

560 KB

 

 Temporal variation in intertidal community recruitment and its relationships to physical forcings, chlorophyll-a concentration and sea surface temperature (2015)

 

  

1.7 MB

 

Two spatial scales in a bleaching event: Corals from the mildest and the most extreme thermal environments escape mortality (2013)


3.6 MB

Turbidity triggers larval release by the intertidal barnacle Semibalanus balanoides (2013)


460 KB

Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity (2010)


300 KB

Habitat selection at settlement endures in recruitment time-series (2009)

150 KB

Complexity and simplification in understanding benthic recruitment (2009)

600 KB

Larval transport and dispersal in the coastal ocean and consequences for population connectivity (2007)

 

1 MB

Stage-specific distribution of barnacle larvae in nearshore waters: potential for limited dispersal and high mortality rates (2007)

1000 KB

Timing of successful settlement: demonstration of a recruitment window in the barnacle Semibalanus balanoides (2006)

 

100 KB

Barnacle larvae in ice: survival, reproduction, and time to post settlement metamorphosis (2005)

300 KB

Observation of very large and steep internal waves of elevation near the Massachusetts coast (2004)

900 KB

Temperature, stratification and barnacle larval settlement in two Californian sites (2002)

 

900 KB

Linking larval settlement to larval transport: assumptions, potentials, and pitfalls (2000)

900 KB

Circulation and larval distribution in internal tidal bore warm fronts (1999)

900 KB

Bathymetric species-diversity patterns and boundary constraints on vertical range distribution (1998)

800 KB

Dependence of settlement rate on suitable substrate area (1997)

600 KB

Internal tidal bores in the nearshore: warm-water fronts, evidence of seaward gravity currents and the onshore transport of neustonic larvae (1994)

2 MB

Spatial and temporal patterns in barnacle settlement rate along a Southern California rocky shore (1994)

1 MB

Predictable upwelling and the shoreward transport of planktonic larvae by internal tidal bores (1991)

500 KB

 

 

 

 
       

Other references

Lentz SJ, JH Churchill, KA Davis, JT Farrar, J Pineda, V Starczak (2016). The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea. J. Geoph. Res. Oceans., 121:1360-1376 PDF

Gyory, J., J. Pineda, and A. Solow (2013). Turbidity triggers larval release by the intertidal barnacle Semibalanus balanoides. Mar. Ecol. Prog. Ser. 476: 141-151 PDF

Blythe J, Da Silva JCB, Pineda J (2011) Nearshore, seasonally persistent fronts in sea surface temperature on Red Sea tropical reefs. ICES J Mar Sci 68:1827-1832 PDF

DiBacco C, Fuchs H, Pineda J, Helfrich K (2011) Swimming behavior and velocities of barnacle cyprids in a downwelling flume. Mar Ecol Prog Ser 433:131-148 PDF

Gyory J, Pineda J (2011) High-frequency observations of early-stage larval abundance: Do winter storms trigger synchronous larval release in Semibalanus balanoides? Marine Biology 158:1581–1589 PDF

Starczak VR, Pérez-Brunius P, Levine HE, Gyory J, Pineda J (2011) The role of season and salinity in influencing barnacle distribution in two adjacent coastal mangrove lagoons. Bull Mar Sci 87:275-299 PDF

Davis K, Lentz S, Pineda J, Farrar J, Starczak V, Churchill J (2011) Observations of the thermal environment on Red Sea platform reefs: a heat budget analysis. Coral Reefs 30:25-36 PDF

Magalhaes JM, Araújo IB, Da Silva JCB, Grimshaw R, Davis K, Pineda J (2011) Atmospheric gravity waves in the Red Sea: a new hot-spot. Nonlin Proc Geophys 18:71-79 PDF

Pineda J, Porri F, Starczak VR, Blythe J (2010) Causes of decoupling between larval supply and settlement and consequences for understanding recruitment and population connectivity. J Exp Mar Biol Ecol 392:9-21  PDF

Tapia, F., DiBacco, C., Jarrett, J.N., Pineda, J. (2010). Vertical distribution of barnacle larvae at a fixed nearshore station in southern California : stage-specific and diel patterns. Estuar. Coast. Shelf Sci. 86, 265-270. PDF

Blythe J, Pineda J (2009) Habitat selection at settlement endures in recruitment time-series. Mar Ecol Prog Ser 396:77-84  PDF

Pineda J, Reyns N, Starczak VR (2009) Complexity and simplification in understanding recruitment in benthic populations. Popul Ecol 51:17-32 PDF

Scotti A, Beardsley RC, Butman B, Pineda J (2008) Shoaling of nonlinear internal waves in Massachusetts Bay. J Geophys Res 113:18. PDF

Pineda J, Hare JA, Sponaugle S (2007) Larval dispersal and transport in the coastal ocean and consequences for population connectivity. Oceanography 20:22-39 PDF

Tapia F, Pineda J (2007) Stage-specific distribution of barnacle larvae in nearshore waters: potential for limited dispersal and high mortality rates. Mar Ecol Prog Ser 342:177-190 PDF

Pérez-Brunius, P., M. López, A. Pares-Sierra, and J. Pineda. 2007. Comparison of upwelling indices off Baja California derived from three different wind data sources. CalCOFI Reports 48:204-214. PDF

Cowen, R.K., G. Gawarkiewicz, J. Pineda, S.R. Thorrold, and F.E. Werner. 2007. Population connectivity in marine systems: an overview. Oceanography 20:14-21. PDF

Scotti, A. and J. Pineda (2007). Plankton accumulation and transport in propagating nonlinear internal fronts. Journal of Marine Research 65: 117-145. PDF

Pineda J, Starczak VR, Stueckle T (2006) Timing of successful settlement: demonstration of a recruitment window in Semibalanus balanoides. Mar Ecol Prog Ser 320:233-237 PDF

Pérez-Brunius, P, M. Lopez M, and J. Pineda (2006) Hydrographic conditions near the coast of northwestern Baja California: 1997 to 2004. Continental Shelf Research 26:885-901. PDF

Pineda J, DiBacco C, Starczak VR (2005) Barnacle larvae in ice: Survival, reproduction, and time to post settlement metamorphosis. Limnol Oceanogr 50:1520-1528 PDF

Ladah, L., F. Tapia F, J. Pineda, and M. Lopez (2005) Spatially heterogeneous, synchronous settlement of Chthamalus spp. larvae in northern Baja California. Marine Ecology Progress Series 302:177-185. PDF

Scotti A, Pineda J (2004) Observation of very large and steep internal waves of elevation near the Massachusetts coast. Geophysical Research Letters 31:L22307 PDF

Tapia, F., J. Pineda, F. Ocampo-Torres, H. Fuchs, E. Parnell, P. Montero and S. Ramos (2004). High-frequency observations of wind-forced onshore transport at a coastal site in Baja California. Continental Shelf Research 24, 1573-1585. PDF

Helfrich, K. and J. Pineda. (2003). Accumulation of particles in propagating fronts. Limnology and Oceanography 48: 1509-1520 PDF

Harding, K. C., T. Härkönen, and J. Pineda. 2003. Estimating quasi extinction risk of European harbour seals: reply to Lonergan & Harwood. Ecology Letters 6:894-897. PDF

Pineda J, López M (2002) Temperature, stratification and barnacle larval settlement in two Californian sites. Cont Shelf Res 22:1183-1198 PDF

Pineda J, Riebensahm D, Medeiros-Bergen D (2002) Semibalanus balanoides in winter and spring: larval concentration, settlement, and substrate occupancy. Marine Biology (Berl) 140:789-800. PDF

Sponaugle, S., R. K. Cowen, A. L. Shanks, S. G. Morgan, J. Leis, J. Pineda, G. Boehlert, M. J. Kingsford, K. Lindeman, C. Grimes, and J. L. Munro. 2002. Predicting self-recruitment in marine populations: Biophysical correlates and mechanisms. Bulletin of Marine Science 49:341-375. PDF

Kingsford, M. J., J. Leis, A. L. Shanks, K. Lindeman, S. Morgan, and J. Pineda. 2002. Sensory environments, larval abilities and local self-recruitment. Bulletin of Marine Science 49:309-340. PDF

Levin, L.A., R.J. Etter, M.A. Rex, A.J. Gooday, C.R. Smith, J. Pineda, C.T. Stuart, R.R. Hessler, and D. Pawson (2001). Environmental influences on regional deep-sea species diversity. Annual Review of Ecology and Systematics 32:51-93. PDF

Souza, A. and J. Pineda. 2001. Tidal mixing modulation of sea surface temperature and diatom abundance in Southern California. Continental Shelf Research 21: 651-666. PDF

Pineda J (2000) Linking larval settlement to larval transport: assumptions, potentials, and pitfalls. Oceanography E Pacif 1:84-105 PDF

Pineda J (1999) Circulation and larval distribution in internal tidal bore warm fronts. Limnol Oceanogr 44:1400-1414 PDF

Pineda J,  and Caswell H (1998) Bathymetric species-diversity patterns and boundary constraints on vertical range distribution. Deep-Sea Res II 45:83-101 PDF

Pineda J, Caswell H (1997) The dependence of settlement rate on substrate area. Mar Biol (Berl) 129:541-548 PDF

Pineda, J. 1995. An internal tidal bore regime at nearshore stations along western USA: predictable upwelling within the lunar cycle. Continental Shelf Research 15:1023-1041. PDF

Pineda J (1994) Spatial and temporal patterns in barnacle settlement along a southern California rocky shore. Mar Ecol Prog Ser 107:125-138  PDF

Pineda J (1994) Internal tidal bores in the nearshore: warm-water fronts, seaward gravity currents and the onshore transport of neustonic larvae. J Mar Res 52:427-458 PDF

Pineda, J. 1993. Boundary effects on the vertical ranges of deep-sea benthic species. Deep-Sea Research 40: 2179-2192. PDF

Marquet P., M. J. Fortin, J. Pineda, D.O. Wallin, J. Clark, Y. Wu, S. Bollens, C. Jacobi and R.D. Holt (1993) Ecological and evolutionary consequences of patchiness: a marine-terrestrial perspective. Pp. 277-304 In: Patch Dynamics, S. Levin, T. Powell and J. H. Steele, editors, Springer-Verlag, Berlin. PDF

Pineda, J. (1992). Mareas internas y transporte larvario. Investigación y Ciencia 287 44-45 (Spanish edition of Scientific American).
Pineda J (1991) Predictable upwelling and the shoreward transport of planktonic larvae by internal tidal bores. Science 253:548-551 PDF
Pineda, J. and A. Escofet (1989). Selective effects of disturbance on populations of sea anemones from northern Baja California, Mexico. Marine Ecology Progress Series 55: 55-62. PDF

 



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