/home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2008_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2009_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2010_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2012_000000.LTA logfile is /home/howitt/adcp/oc415/oc415.runlog ------- starting Matlab engine ------- ------------ step 1: scan data (create .scn file) ------------- hi yn_query automatically returning, with 1 scanning files for time ranges... starting in /home/howitt/adcp/oc415/scan executing commands from /home/howitt/adcp/oc415/scan yn_query automatically returning, with 1 running python command "scanraw" --> clear all <-- >> --> close all <-- >> --> cd /home/howitt/adcp/oc415/scan <-- >> --> scan_tmp <-- writing scan info to oc415.scn ans = filename /home/howitt/adcp_nb/work/pingdata/OC415-2001_000000.LTA has only one ensemble ans = filename /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA has only one ensemble ans = filename /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA has only one ensemble >> writing time range from oc415.scn to oc415.tr starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/scan yn_query automatically returning, with 1 running python command "get_time_range" extracting time range no database found loaded_time_range is 1970/01/01 01:00:00 to 1970/01/01 01:01:01 (-10000.000000 to -10001.000000) ------------ step 2: load data into codas database ------------- using data files (as seen from scan/ or load/ directory): /home/howitt/adcp_nb/work/pingdata/OC415-2001_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2002_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2004_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2005_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2008_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2009_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2010_000000.LTA /home/howitt/adcp_nb/work/pingdata/OC415-2012_000000.LTA starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/load yn_query automatically returning, with 1 running python command "loadlta" --> clear all <-- >> --> close all <-- >> --> cd /home/howitt/adcp/oc415/load <-- >> --> loadlta_tmp <-- file = /home/howitt/adcp_nb/work/pingdata/OC415-2001_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2001_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2002_000000.LTA WARNING: bad navigation data likely at ensemble 27 (2005/07/18 16:25:20) WARNING: bad navigation data likely at ensemble 2153 (2005/07/26 01:35:18) WARNING: bad navigation data likely at ensemble 2377 (2005/07/26 20:15:21) WARNING: bad navigation data likely at ensemble 2601 (2005/07/27 14:55:21) deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation file = /home/howitt/adcp_nb/work/pingdata/OC415-2004_000000.LTA WARNING: bad navigation data likely at ensemble 346 (2005/07/29 19:32:28) deleting ensemble 346: bad navigation deleting ensemble 347 (2005/07/29 19:42:22): interval (25.0 sec) too short file = /home/howitt/adcp_nb/work/pingdata/OC415-2005_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2005_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2008_000000.LTA file = /home/howitt/adcp_nb/work/pingdata/OC415-2009_000000.LTA WARNING: bad navigation data likely at ensemble 454 (2005/07/31 12:01:03) deleting ensemble 454: bad navigation file = /home/howitt/adcp_nb/work/pingdata/OC415-2010_000000.LTA file = /home/howitt/adcp_nb/work/pingdata/OC415-2012_000000.LTA >> making load/ldcodas.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/load yn_query automatically returning, with 1 running python command "ldcodas" newblock for file(ii=0): OC415-2002_000000.LTA.cmd, stardd = 198.597396 found a new_block "cmd" file after database ends time range of currently loaded data: 1970/01/01 01:00:00 to 1970/01/01 01:01:01 (-10000.000000 to -10001.000000) BEFORE: ok_cmdlist is: OC415-2002_000000.LTA.cmd OC415-2004_000000.LTA.cmd OC415-2008_000000.LTA.cmd OC415-2009_000000.LTA.cmd OC415-2010_000000.LTA.cmd OC415-2012_000000.LTA.cmd ii is 0 AFTER: ok_cmdlist is: OC415-2002_000000.LTA.cmd OC415-2004_000000.LTA.cmd OC415-2008_000000.LTA.cmd OC415-2009_000000.LTA.cmd OC415-2010_000000.LTA.cmd OC415-2012_000000.LTA.cmd DATABASE_NAME: ../adcpdb/oc415 DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2005 END @OC415-2002_000000.LTA.cmd @OC415-2004_000000.LTA.cmd @OC415-2008_000000.LTA.cmd @OC415-2009_000000.LTA.cmd @OC415-2010_000000.LTA.cmd @OC415-2012_000000.LTA.cmd end yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/ldcodas ldcodas.tmp Stripping comments from control file % OPTIONS: % ======= % DATABASE_NAME: ../adcpdb/oc415 % DEFINITION_FILE: vmadcp.def % LOG_FILE: load.log % YEAR_BASE: 2005 % ======= ->../adcpdb/oc415<- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/lstblock oc415 oc415.lst DATABASE: oc415 SUCCESSFULLY OPENED % DATABASE: Closed successfully writing time range from oc415.lst to oc415.tr starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 running python command "get_time_range" extracting time range loaded_time_range is 2005/07/18 14:20:15 to 2005/08/01 18:47:25 (198.597396 to 212.782928) starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 running python command "lst_conf" dbname: oc415 output: oc415.cnh time_ranges: all yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/lst_conf lst_conf.tmp Stripping comments from control file ok boss %% WARNING: Search before beginning Time range: 1970/01/01 01:01:01 to 2070/01/01 01:01:01 lst_conf completed. ------------ step 3 (create suitable setup files for editing) ------------- making asetup.m starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "asetup" starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "aflagit_setup" ------------ step 4: run setflags ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "setflags" dbname: ../adcpdb/oc415 pg_min: 50 set_range_bit time_ranges: all yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/setflags setflags.tmp Stripping comments from control file % OPTIONS: % ======= % dbname: ../adcpdb/oc415 % pg_min: 50 % set_range_bit % time_ranges: % DATABASE: ../adcpdb/oc415 successfully opened Time range: 1970/01/01 01:01:01 to 2070/01/01 01:01:01 %% WARNING: Search before database beginning % DATABASE: Closed successfully SETFLAGS time range list completed. Done. ------------ step 5: get fixes from load/*.gps1 files ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "catnav" ------------ step 7: rotate ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/cal/rotate yn_query automatically returning, with 1 running python command "rotated" last rotated time from log file: 2005/07/11 11:23:43 time range of currently loaded data: 2005/07/18 14:20:15 to 2005/08/01 18:47:25 (198.597396 to 212.782928) cal/rotate/rotate.tmp exists starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/cal/rotate yn_query automatically returning, with 1 running python command "rotate" DB_NAME: ../../adcpdb/oc415 LOG_FILE: rotate.log TIME_RANGE: 2005/07/18 14:09:13 to 2005/08/01 18:52:29 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2005 time_angle_file: oc415.ang amplitude= 1 angle_0= 0 end end yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/rotate rotate.tmp Stripping comments from control file % DATABASE: ../../adcpdb/oc415 successfully opened -------- Pass 1: Checking control file... -------- %% WARNING: Search before database beginning %% WARNING: Search beyond database end %% WARNING: Reached end of database % OPTIONS: % ======= % water_and_bottom_track:% OPTIONS: % ======= % year_base= 2005 % time_angle_file: oc415.ang % amplitude= 1.000000 % angle_0= 0.000000 % ======= % ======= %% WARNING: Search before database beginning ERROR: No angle file time to match database time 198.597396 % DATABASE: Closed successfully ------------ step 8: run adcpsect (for calib) ------------- making nav/as_nav.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "as_nav" dbname: ../adcpdb/oc415 output: oc415 step_size: 1 ndepth: 20 time_ranges: separate year_base= 2005 option_list: /*pg_min= 50 */ pg_min= 80 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2005/07/18 14:20:15 to 2005/08/01 18:47:25 /* the whole time range */ yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/adcpsect as_nav.tmp Stripping comments from control file DATABASE: ../adcpdb/oc415 SUCCESSFULLY OPENED% OPTIONS: % ======= % pg_min= 80 % navigation:% OPTIONS: % ======= % reference_bins % ======= % statistics:% OPTIONS: % ======= % mean % units= 0.010000 % ======= % flag_mask: % ======= Time range: 2005/07/18 14:20:15 to 2005/08/01 18:47:25 Warning at 2005/07/25 16:35:12 bin range is 1 to 0 Warning at 2005/07/26 01:05:12 bin range is 1 to 15 Warning at 2005/07/27 22:20:13 bin range is 1 to 6 End of control file ADCPSECT completed. ------------ step 9: run refabs (for calib) ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "refabs" fix_file_type: simple reference_file: oc415.nav fix_file: oc415.gps output: oc415.ref year_base= 2005 ensemble_length= 300 gap_tolerance= 10 yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/refabs refabs.tmp Stripping comments from control file WARNING: fixes out of sequence at 208.5834954, 198.5896759 ------------ step 10: get smoothed navigation (for calib) ------------- making nav/smoothr.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "smoothr" reference_file: oc415.nav refabs_output: oc415.ref output: oc415.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/smoothr smoothr.tmp Stripping comments from control file Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. W eleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation deleting ensemble 27: bad navigation deleting ensemble 2153: bad navigation deleting ensemble 2377: bad navigation deleting ensemble 2601: bad navigation file = /home/howitt/adcp_nb/work/pingdata/OC415-2004_000000.LTA WARNING: bad navigation data likely at ensemble 346 (2005/07/29 19:32:28) deleting ensemble 346: bad navigation deleting ensemble 347 (2005/07/29 19:42:22): interval (25.0 sec) too short file = /home/howitt/adcp_nb/work/pingdata/OC415-2005_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2005_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2006_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA Warning: /home/howitt/adcp_nb/work/pingdata/OC415-2007_000000.LTA has fewer than 3 ensembles (ignore) file = /home/howitt/adcp_nb/work/pingdata/OC415-2008_000000.LTA file = /home/howitt/adcp_nb/work/pingdata/OC415-2009_000000.LTA WARNING: bad navigation data likely at ensemble 454 (2005/07/31 12:01:03) deleting ensemble 454: bad navigation file = /home/howitt/adcp_nb/work/pingdata/OC415-2010_000000.LTA file = /home/howitt/adcp_nb/work/pingdata/OC415-2012_000000.LTA >> making load/ldcodas.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/load yn_query automatically returning, with 1 running python command "ldcodas" newblock for file(ii=0): OC415-2002_000000.LTA.cmd, stardd = 198.597396 found a new_block "cmd" file after database ends time range of currently loaded data: 1970/01/01 01:00:00 to 1970/01/01 01:01:01 (-10000.000000 to -10001.000000) BEFORE: ok_cmdlist is: OC415-2002_000000.LTA.cmd OC415-2004_000000.LTA.cmd OC415-2008_000000.LTA.cmd OC415-2009_000000.LTA.cmd OC415-2010_000000.LTA.cmd OC415-2012_000000.LTA.cmd ii is 0 AFTER: ok_cmdlist is: OC415-2002_000000.LTA.cmd OC415-2004_000000.LTA.cmd OC415-2008_000000.LTA.cmd OC415-2009_000000.LTA.cmd OC415-2010_000000.LTA.cmd OC415-2012_000000.LTA.cmd DATABASE_NAME: ../adcpdb/oc415 DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2005 END @OC415-2002_000000.LTA.cmd @OC415-2004_000000.LTA.cmd @OC415-2008_000000.LTA.cmd @OC415-2009_000000.LTA.cmd @OC415-2010_000000.LTA.cmd @OC415-2012_000000.LTA.cmd end yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/ldcodas ldcodas.tmp Stripping comments from control file % OPTIONS: % ======= % DATABASE_NAME: ../adcpdb/oc415 % DEFINITION_FILE: vmadcp.def % LOG_FILE: load.log % YEAR_BASE: 2005 % ======= ->../adcpdb/oc415<- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/lstblock oc415 oc415.lst DATABASE: oc415 SUCCESSFULLY OPENED % DATABASE: Closed successfully writing time range from oc415.lst to oc415.tr starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 running python command "get_time_range" extracting time range loaded_time_range is 2005/07/18 14:20:15 to 2005/08/01 18:47:25 (198.597396 to 212.782928) starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/adcpdb yn_query automatically returning, with 1 running python command "lst_conf" dbname: oc415 output: oc415.cnh time_ranges: all yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/lst_conf lst_conf.tmp Stripping comments from control file ok boss %% WARNING: Search before beginning Time range: 1970/01/01 01:01:01 to 2070/01/01 01:01:01 lst_conf completed. ------------ step 3 (create suitable setup files for editing) ------------- making asetup.m starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "asetup" starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "aflagit_setup" ------------ step 4: run setflags ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "setflags" dbname: ../adcpdb/oc415 pg_min: 50 set_range_bit time_ranges: all yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/setflags setflags.tmp Stripping comments from control file % OPTIONS: % ======= % dbname: ../adcpdb/oc415 % pg_min: 50 % set_range_bit % time_ranges: % DATABASE: ../adcpdb/oc415 successfully opened Time range: 1970/01/01 01:01:01 to 2070/01/01 01:01:01 %% WARNING: Search before database beginning % DATABASE: Closed successfully SETFLAGS time range list completed. Done. ------------ step 5: get fixes from load/*.gps1 files ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "catnav" ------------ step 7: rotate ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/cal/rotate yn_query automatically returning, with 1 running python command "rotated" last rotated time from log file: 2005/07/11 11:23:43 time range of currently loaded data: 2005/07/18 14:20:15 to 2005/08/01 18:47:25 (198.597396 to 212.782928) cal/rotate/rotate.tmp exists starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/cal/rotate yn_query automatically returning, with 1 running python command "rotate" DB_NAME: ../../adcpdb/oc415 LOG_FILE: rotate.log TIME_RANGE: 2005/07/18 14:09:13 to 2005/08/01 18:52:29 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2005 time_angle_file: oc415.ang amplitude= 1 angle_0= 0 end end yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/rotate rotate.tmp Stripping comments from control file % DATABASE: ../../adcpdb/oc415 successfully opened -------- Pass 1: Checking control file... -------- %% WARNING: Search before database beginning %% WARNING: Search beyond database end %% WARNING: Reached end of database % OPTIONS: % ======= % water_and_bottom_track:% OPTIONS: % ======= % year_base= 2005 % time_angle_file: oc415.ang % amplitude= 1.000000 % angle_0= 0.000000 % ======= % ======= %% WARNING: Search before database beginning ERROR: No angle file time to match database time 198.597396 % DATABASE: Closed successfully ------------ step 8: run adcpsect (for calib) ------------- making nav/as_nav.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "as_nav" dbname: ../adcpdb/oc415 output: oc415 step_size: 1 ndepth: 20 time_ranges: separate year_base= 2005 option_list: /*pg_min= 50 */ pg_min= 80 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2005/07/18 14:20:15 to 2005/08/01 18:47:25 /* the whole time range */ yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/adcpsect as_nav.tmp Stripping comments from control file DATABASE: ../adcpdb/oc415 SUCCESSFULLY OPENED% OPTIONS: % ======= % pg_min= 80 % navigation:% OPTIONS: % ======= % reference_bins % ======= % statistics:% OPTIONS: % ======= % mean % units= 0.010000 % ======= % flag_mask: % ======= Time range: 2005/07/18 14:20:15 to 2005/08/01 18:47:25 Warning at 2005/07/25 16:35:12 bin range is 1 to 0 Warning at 2005/07/26 01:05:12 bin range is 1 to 15 Warning at 2005/07/27 22:20:13 bin range is 1 to 6 End of control file ADCPSECT completed. ------------ step 9: run refabs (for calib) ------------- starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "refabs" fix_file_type: simple reference_file: oc415.nav fix_file: oc415.gps output: oc415.ref year_base= 2005 ensemble_length= 300 gap_tolerance= 10 yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/refabs refabs.tmp Stripping comments from control file WARNING: fixes out of sequence at 208.5834954, 198.5896759 ------------ step 10: get smoothed navigation (for calib) ------------- making nav/smoothr.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "smoothr" reference_file: oc415.nav refabs_output: oc415.ref output: oc415.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/smoothr smoothr.tmp Stripping comments from control file Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Warning: out of space in avg_fix2fix array with 500 elements. Optimizing positions: finding continuous data ranges. There are 19 segments for position integration. Optimization iteration 1 of 5 Optimization iteration 2 of 5 Optimization iteration 3 of 5 Optimization iteration 4 of 5 Optimization iteration 5 of 5 Writing ASCII final output file, oc415.sm. starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "refsm" --> clear all <-- >> --> close all <-- >> --> cd /home/howitt/adcp/oc415/nav <-- >> --> refsm <-- >> ------------ step 11: put smoothed navigation back into database ------------- making nav/putnav.tmp starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/nav yn_query automatically returning, with 1 running python command "putnav" dbname: ../adcpdb/oc415 position_file: refsm.sm year_base= 2005 tolerance= 5 navigation_sources: gps end yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/putnav putnav.tmp Stripping comments from control file DATABASE: ../adcpdb/oc415 SUCCESSFULLY OPENED% OPTIONS: % ======= % gps % ======= ------------ step 16: list temperature and plot it ------------- edit/lst_temp.tmp exists starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "lst_temp" dbname: ../adcpdb/oc415 output: oc415.tem step_size= 1 year_base= 2005 time_ranges: all yn_query automatically returning, with 1 about to run /home/howitt/adcp/codas3/bin/lnx/lst_temp lst_temp.tmp Stripping comments from control file %% WARNING: Search before beginning Time range: 1970/01/01 01:01:01 to 2070/01/01 01:01:01 LST_TEMP completed. starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/edit yn_query automatically returning, with 1 running python command "plottemp" cannot run matlab ------------ step 17: bottom track and watertrack calibrations ------------- cal/botmtrk/lst_btrk.tmp exists starting in /home/howitt/adcp/oc415 executing commands from /home/howitt/adcp/oc415/cal/botmtrk yn_query automatically returning, with 1 running python command "lst_btrk" dbname: ../../adcpdb/oc415 output: oc415.btm step_size= 1 year_base= 2005 time_ranges: 2005/07/18 14:20:15 to 2005/08/01 18:47:25 /* whole time range */